rs28129723 SNP Detail

Summary

• ID
  rs28129723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108490161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTCAAAT CCCAAGCTTT
  TGTTGTAAGC TTTATTCATC TAGTTCCTTA TCTGTTCTGA GGAGGCCATG GCCTGGGTTC
  TGCTTGTGAC TGCTACCCAC CCCCTTCTCT GTGGGCCACA TGTGCGTGTG GACTTCAGGC
  TGCTCCTTGA AGCCAGTGTT CGGGAAGATC AAGGGAAAAC CAGGAGAGAG TAGTGGGTTT
  Y
  GCATCTCCAG CCAGAGCATT GACACTTATC CAAATGTCTA GGTTATTTAT AAGACATTGA
  GAGTAAGCAG TCCGCCACTT CCCATATTGC AGGAAGAAGG CTGGGCTCTC CTGAAGCTGA
  CACCCAGCAT ATTTTAGCTG CTCTGAGAAC CTCCCTGCCC CAGTCTGTCC TCTCGATCAC
  TCTCCGTTTG TCTGTGGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38280443	NES09506315	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28129723					SNP	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280443	NES09506315	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108490161 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Intron
				Noncoding-Transcript-Variant
Gm17354	predicted gene, 17354			879 bp downstream
Rr597206	regulatory region 597206			432 bp distal
Tssr38309	transcription start site region 38309			121 bp upstream
Tssr38310	transcription start site region 38310			132 bp upstream
Tssr38311	transcription start site region 38311			156 bp upstream