rs28129722 SNP Detail

Summary

• ID
  rs28129722
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108490465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCTCCTG AAGCTGACAC
  CCAGCATATT TTAGCTGCTC TGAGAACCTC CCTGCCCCAG TCTGTCCTCT CGATCACTCT
  CCGTTTGTCT GTGGCTGTCA CAGGTTTTGG ATGGCAGAAA GCCCACTGGG GGGAAGCTGG
  AGGTGAAGGT GAGGCTTCGG GAGCCTCTGA GCAGCCAGGA CGTGCAGACG GTCACTGAGA
  R
  CTGGCTGGTC CTGGAGCCTC GGGGCCTGTG AAGAGGTAGG TCGCCCTGCT AAAACTTCCT
  TTTCACCCAT TTCTGGGGAG AAAGCATTTG ATTTAATCCT CTGAAGGAAA CTAAATGCAG
  AGGTGTTGGG AAGTGTTTGT GGGTTGTTTC TAAAGTTCCT CAGTAGACTT GGGGCAGGAA
  GGGAGCTTTT CAAGGTTAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38280442	NES09506316	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28129722					SNP	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280442	NES09506316	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108490465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			Coding-NonSynonymous
				Noncoding-Transcript-Variant
Gm17354	predicted gene, 17354			575 bp downstream
Rr597206	regulatory region 597206			736 bp distal
Tssr38309	transcription start site region 38309			174 bp downstream
Tssr38310	transcription start site region 38310			165 bp downstream
Tssr38311	transcription start site region 38311			137 bp downstream