rs28129720 SNP Detail

Summary

• ID
  rs28129720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:108490799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTAC ATCAGAGATG CTGCTACACA
  Y
  GCACCAAAGA CCTGATAACT AACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38280440	NES09506318	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C		C	C	T	C		C	C	C	C		C
ss45681748	mCV22674759	ABI	CRAMUS_MOUSE	f	SNP		T			C		C
ss321252728	CHEV_4_108306207	CHEVERUD	SCREENING_POP	f	SNP										T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28129720					SNP	T	T	C	C	C	C	C	T	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38280440	NES09506318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108490799 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cc2d1b	coiled-coil and C2 domain containing 1B			mRNA-UTR
				Noncoding-Transcript-Variant
Gm17354	predicted gene, 17354			241 bp downstream
Rr597206	regulatory region 597206			1070 bp distal
Tssr38309	transcription start site region 38309			508 bp downstream
Tssr38310	transcription start site region 38310			499 bp downstream
Tssr38311	transcription start site region 38311			471 bp downstream