rs28082051 SNP Detail

Summary

• ID
  rs28082051
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88128051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCTTAGTA ATCTCAGCAG CATGAGAGTG AGCATGTGGA
  TGGATAGTCT TAGGCTTCGG CTTCTCTGGG CCTTGAATGA TGCTGGCACA TTTACTACAG
  S
  AGCCACTACC AGATGGCTGC TTCACACTTT TCCTTCGATT TCTCTGTTTA TATTTTTGTG
  CTTTGTTGAA ATTTACAAAT GAGGGTCTCC AAATTTACTT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38202793	NES09573306	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28082051					SNP	C	G	G	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38202793	NES09573306	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88128051 () rs orientation: forward

Symbol	Name	Function Class
Focad	focadhesin	Intron
Rr594973	regulatory region 594973	within coordinates
Rr594974	regulatory region 594974	1480 bp proximal
Tssr37767	transcription start site region 37767	within coordinates