rs28082040 SNP Detail

Summary

• ID
  rs28082040
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88129692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCTGACAT TTTCTCCATT
  TCTCATTATC TGATCTCAAT GCCTTTCCCC TCCTCCTTTC CTTTAAAGCT TTCTTACTTT
  ATTGCCCAAA AGCTATGGAC CAGTTAGAGT GGTGTGAATA GGGATATAAA TTCTATTGGA
  TTTCTCAGTG CCTGCTTTTG TTACAGGTAT TTTGATGGGT TCATTAAAGC ATATCAGTTG
  R
  AGTGGGGGCA GGGAAGAAAA TGGAGTCGAG GAAAGGAAAT ATATTGTCAT CTGAAATAAT
  ACATAGATAT TTGAGCTTCA CCTGGAAATA AAAATAATTT TATAGAACGG GAGATAGAAA
  CTCTTTGTCA GGTTGCTAAT GAGAGGCTTG ACCTAGCTGC TGCAGCAGCA GCATCTTTGG
  GGATGATGAG AGATGCAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38202782	NES09573317	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28082040					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38202782	NES09573317	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88129692 () rs orientation: forward

Symbol	Name	Function Class
Focad	focadhesin	Intron
Rr594973	regulatory region 594973	1013 bp distal
Rr594974	regulatory region 594974	within coordinates
Tssr37767	transcription start site region 37767	1633 bp downstream