rs28082038 SNP Detail

Summary

• ID
  rs28082038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:88129966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTCACCT GGAAATAAAA
  ATAATTTTAT AGAACGGGAG ATAGAAACTC TTTGTCAGGT TGCTAATGAG AGGCTTGACC
  TAGCTGCTGC AGCAGCAGCA TCTTTGGGGA TGATGAGAGA TGCAAAATGC ACTGTTGCTA
  AGCAACTCTC TTGGCTGCCT CTGGAGCAGG TTCATATGTG CTAAGAGCTA ATGAATCCTT
  R
  TGTCTGCTCT TTGAAAATGC TCAAAAAAAA AAAAGCCAAT GAAGACATTC CCAGACATTT
  AGCATTTATA AGTACTGAAC CTTTCTTGCC ATGTCATCTA CTCATTAAAA ATTAAATTGA
  CCATTTATTG GGTACTGAAT ATTGCTTTAT TTTTCAAGGT GGGTAAGGTT TGAGCCCTAT
  ATAAATATAT TTTCACAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38202780	NES09573319	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28082038					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38202780	NES09573319	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:88129966 () rs orientation: forward

Symbol	Name	Function Class
Focad	focadhesin	Intron
Rr594973	regulatory region 594973	1287 bp distal
Rr594974	regulatory region 594974	within coordinates
Tssr37767	transcription start site region 37767	1907 bp downstream