rs28078362 SNP Detail

Summary

• ID
  rs28078362
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:98218995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTATTTC AGGCCAAAGG
  AACAGCATGT TTGAAGGCTT GGAGTACAGG AGAGAAAAAT TAGTTAGCAA GTATTTACTG
  GATTGTCACT GGGCATGTGA AGGTCTGGTC CTTGCCTCTG AGGTCAGAGC CTAGTAGGGA
  AACAGGAAAG TCGCACTATA TGATACCAAT TAAAATCCAG TAAAATCAAG ACCTGGCACA
  Y
  AGTAAGTCCT CATGGAGTGT GTGTTGAAAG AAGAATGACT ATAAAAATGC AATGTCAGTG
  GTTGGCACAG TACAGCCGAG ATCTGTCTTA GTACATGGTC AGGGGAGGGG GAAGGTCTAT
  GGAAGCCCAG AGAGTATGTA CAAAGCTCTA ACTGTGCCTG TGTGGTTTTC TAGTGAAGAG
  GCCAGAACAT TCACATTCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38244686	NES09524070	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28078362					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38244686	NES09524070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98218995 () rs orientation: forward

Symbol	Name	Function Class
0610025J13Rik	RIKEN cDNA 0610025J13 gene	within coordinates
Rr595725	regulatory region 595725	1162 bp proximal