rs28051123 SNP Detail

Summary

• ID
  rs28051123
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66305506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGACAC CTTGGCGGCC
  TGGTCGTATC TGGTCGTATA TGATGTATTA TGCTAAGCTG GGGCTTTAAT ATACTTTGCT
  TCCCTTCTGG CATGTATAGA CTTGGAAACA TGTTTATGAC ATACAAGTGA CATTTGGAAA
  TACACTGCTG CAGTTCTCTT TAGCTTACAC GGGAAATACA TGGGCTGTTG GGTATATGCC
  M
  TGTTCTCATT GACCTAGAGA ATATATCGCT TAAAGTCAAC CACTTTCTTT AGCTTCCAAT
  TATAAATTGA TGAGATGTCT TGAAGCCAAA AACAGAATGC ACTCTAAATG GTAGATATGA
  AAAGCATGGT AACCAGGGGT GAAAAATCCC CTTTAAACAT CTAAGACTAA CTATTGCCTT
  CTTGGCTTGA GTTTTGTTTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss38142365	NES09314982	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs28051123					SNP	A	A	A	A	A	A	C	A	A	A	C	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142365	NES09314982	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66305506 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558187	regulatory region 558187	1651 bp distal
Rr558188	regulatory region 558188	1759 bp distal
Rr558189	regulatory region 558189	1400 bp distal