rs27991874 SNP Detail

Summary

• ID
  rs27991874
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCTCAA ACGTATGGAG
  AGCAACTGAG AAAAACACCC TATGTTGACC TCTACCCTCC ATACACACAA GACACACGAA
  CATACACACG CTAAATACAT AGCAGACTAG TCTTAATCTG AACACAGTTC ATTGCAAATC
  TGATTGGTGA TATGACACTA TTTTAGAATG AAAACCCATG GAGATTACAT TGGCAGCTTA
  S
  ACACAGCCAT TTTGGAACTG AAAGAGATTC CCTCTTGCAG GTACTCCCAA CCAAAAGAAC
  TTTACCAAGT CTTCCCTGCT ACTCTGCTAA GGGTGTTACA TATGAATGGA TTCTGCTCTA
  TTCTCTCCTA CATTCTCAGT ATCAATCTCT GGCACCAAGC AAGAGGTCAT TTGTGAAGAA
  ACGCTTCCTC AACTGTCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129197	NES09278038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991874					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129197	NES09278038	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714965 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11720	CpG island 11720			612 bp proximal
Mettl5	methyltransferase 5, N6-adenosine			Intron
				Noncoding-Transcript-Variant
Mettl5os	methyltransferase 5, opposite strand			1061 bp upstream
Rr397023	regulatory region 397023			264 bp upstream
Rr558487	regulatory region 558487			522 bp distal
Rr558488	regulatory region 558488			984 bp proximal
Rr558489	regulatory region 558489			1004 bp proximal
Rr558490	regulatory region 558490			1072 bp proximal
Tssr24451	transcription start site region 24451			936 bp downstream