rs27991873 SNP Detail

Summary

• ID
  rs27991873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69715852 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACTTCTT GCAGGCGACT
  CTCTAGTTCC TTAAGCTTTA ACTTCTTCAT CGTTTTCTCT GTATTTTAAA GTTTGGGCTC
  CTGGGGCTTC ACAGCACGGG AGCTGCAGGG AAGTCTACCT AACCCGAAAC TCCCCAGCGG
  TGCAGGGTGG GGGTGGGGTG GAGGGTCGGG GACAGACTAT TTAGGACTCA GCGAGGGGAT
  Y
  CCACGAGCCT CGCGGGGATC GCCGCCCGTG GAACCCAGAC GCTCCAGGAA AGCACTCGTA
  TGCCTCTAGC TGGTCCTCGC GGTCCCTCCC CGCAGTGCCG GAAGTACCGA CACGCATGCA
  CGCCCTCTGC CGGGCGCCGA GCTGCAACCT CTGCCGGGCT CCCTGGTTCC GACGAGGACC
  AGAGTGGTTT TTTTGGTCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38129196	NES09278041	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27991873					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38129196	NES09278041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69715852 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11720	CpG island 11720			within coordinates
Mettl5	methyltransferase 5, N6-adenosine			mRNA-UTR
				Noncoding-Transcript-Variant
Mettl5os	methyltransferase 5, opposite strand			174 bp upstream
Rr397023	regulatory region 397023			323 bp downstream
Rr558487	regulatory region 558487			1409 bp distal
Rr558488	regulatory region 558488			97 bp proximal
Rr558489	regulatory region 558489			117 bp proximal
Rr558490	regulatory region 558490			185 bp proximal
Tssr24451	transcription start site region 24451			49 bp downstream