rs27986647 SNP Detail

Summary

• ID
  rs27986647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:70885340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTGATCC AGCACATCCA
  TCCTGTACTG TACTTCTGTC GATCAGAAAG CTGGTGTGCT TACTGACTTT TTCTTTAAGC
  ACTTAAGATC ACGGAGTGGC ATGCCAAGTC TATTAAGTCT ATGTGGGAGA TGCAGACACC
  ACACTAAAGG GGTTTACAAT GAGGTTACGG GTCGCATTTG GTATACAGTT ACGGAAATTT
  Y
  TAGTATGTTA GTAATTTTGA ACACGCAGGC TGAGCTAGTT CACAGAGAAT GTTATTTTTT
  ACTTAGAGAA GTCAACCTGG ATTATCTTAG GCAGTTCAAT AAGAATGCAA ACATTTCATA
  TTTTATTCCC TATAAGGGGG AAAAATGGAA GGAGGAAGAA AACACAGCAA TTACCACAAA
  ACCAGTCAGG GTCCCCGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
ss38125080	NES09278484	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	WSB/EiJ
rs27986647					SNP	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38125080	NES09278484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:70885340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11734	CpG island 11734			351 bp proximal
Dcaf17	DDB1 and CUL4 associated factor 17			332 bp upstream
Mettl8	methyltransferase 8, methylcytidine			Intron
				Noncoding-Transcript-Variant
Rr397032	regulatory region 397032			517 bp upstream
Rr558662	regulatory region 558662			within coordinates
Rr558663	regulatory region 558663			566 bp proximal
Rr558664	regulatory region 558664			741 bp proximal
Rr558665	regulatory region 558665			1268 bp proximal
Tssr18237	transcription start site region 18237			735 bp upstream
Tssr24467	transcription start site region 24467			508 bp downstream
Tssr24468	transcription start site region 24468			520 bp downstream
Tssr24469	transcription start site region 24469			538 bp downstream