rs27970797 SNP Detail

Summary

• ID
  rs27970797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66270008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAAATGT GTACATCTTC
  AATCAATTAA ATACAGGACA AATTTAGTCA ATCACAAATG ATCAACACGC CCCTGTTCAT
  TGTGCTTAGC AGTATGAAAA TGGCACCCAG GCAAATTGAT TTCGGTAACA CTCCTTTTCA
  TTCTTTTAAT TCAATAGTGA GAAGAATATA AGGCAGTTTT CAATGTTCTA TCCACAGTAA
  Y
  CCTGTAGTTA GTCTGCCTTA CTGCTTACAC CAGAGCTCAT TTGAAGACAC CCAAGCAAAT
  GACAGGAAAC TTTTAACTCT GGTCAAGTCC CAATCACAGA CCCTTGCTTG CCAAGGACAC
  AAAGGAAGCC AAACTTTCAA ACATGCTGCA TTGATCTCCA ACTTTTTAAA TCCCTCTGTC
  ATTTTAAATG AGGTGCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
ss38142517	NES09291994	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	NOD/ShiLtJ	WSB/EiJ
rs27970797					SNP	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142517	NES09291994	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66270008 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	1216 bp upstream
Rr558183	regulatory region 558183	723 bp proximal
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron
Tssr18000	transcription start site region 18000	1192 bp upstream
Tssr18001	transcription start site region 18001	1249 bp upstream
Tssr24381	transcription start site region 24381	1089 bp downstream
Tssr24382	transcription start site region 24382	1231 bp downstream
Tssr24383	transcription start site region 24383	1485 bp downstream