rs27970673 SNP Detail

Summary

• ID
  rs27970673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66293716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGCAGAG GGCAATGTCT
  GCTGGCTATC TTTACCAGCA TCACAGGAGG ATCACCTTCA GTTATTTTTC TTCACTATCT
  TTTCTTTCAG TATGAACTCC TTCATGTATA AGTCATTAAA CTTGTAGATT TTATTTTTTT
  AATAAATGGA AGCCAACAAA GAAGGAATAA GCAGAGTACA AAGCACGCTT CCAAGGTGTT
  W
  TGTTTTTGCT GTATCCTCTG AATTTTTATT TTGAGGATCT CATTCATATA CTCCATAGAC
  AGGAATAAAT TTTGCATAAT CTGTGAGGAA GACAATTCTT GGAAAATTAT CGTGATATTA
  AGAAGCATCT AGATCCCCAC CTGATGTCAT GCAGCCTGCT TAGGAATCCT TTTACTTGAA
  TCCACACAGC CCAGATAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38142392	NES09315240	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970673					SNP	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142392	NES09315240	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66293716 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558184	regulatory region 558184	701 bp distal
Rr558185	regulatory region 558185	1501 bp proximal