rs27970668 SNP Detail

Summary

• ID
  rs27970668
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66294642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGTACG GGCTGGCAAG
  CAAACTAGCT CAGCTGCCAC CCAGGCCCAG GTCCAGGGCT TTGAGTTGGC CCACCACAAC
  ATCTACACAG TCTATGAACT GCTAGAGTCT GTGAAGAGGG CAGACATTTT CAGATAAATT
  TTTGACATAT GACTAACCCT TTTTTTTCCC CAGGTATCAG AAGCGAATAT GAACTATTCC
  R
  CTGCGTTGTT GCAGCCTAGA TGTGCTGATA TCTGCGTGGG TGAATTGGGA GGGGCAGTGC
  GCTGGCCTCC TCTCTGGTTT GTCTGCTGAC TTCGGGTTGA TTGCTTGGAA TTGGCCATAG
  TGTACCTGCA TGGTCAGATT TAGCAAAATG TACATAAAAT AAAGCTTTAT TTCCTCACCT
  TATCAAGGCC CTAGATAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38142387	NES09315202	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27970668					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38142387	NES09315202	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66294642 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558184	regulatory region 558184	1627 bp distal
Rr558185	regulatory region 558185	575 bp proximal
Rr558186	regulatory region 558186	1334 bp proximal