rs27967864 SNP Detail

Summary

• ID
  rs27967864
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74511386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAGTGGCT GGGGGCCTGG AAAGTCTACC TCGGAGTCAG
  GTGGTGCAGA TAGACTCCAA CAGGCAGGCA GACGCTATTG AGGGCCCCTG GAGAACCAAC
  M
  GATCTCCCTG GGAGATGCTA TGACCATCAA ATTCAAGGGC TCCAGAGGAG TCTTGGGGAT
  ATGCCACGAG ATTGCTCAGG GCTTAGTGGG GCTCCAACAC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss38112886	NES09253864	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27967864					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112886	NES09253864	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74511386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11793	CpG island 11793			295 bp distal
Cpgi11794	CpG island 11794			521 bp proximal
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559343	regulatory region 559343			210 bp distal
Rr559344	regulatory region 559344			791 bp proximal
Rr559345	regulatory region 559345			1914 bp proximal
Tssr18395	transcription start site region 18395			1478 bp downstream
Tssr18396	transcription start site region 18396			1361 bp downstream
Tssr18397	transcription start site region 18397			1341 bp downstream
Tssr18398	transcription start site region 18398			381 bp downstream
Tssr18399	transcription start site region 18399			949 bp upstream
Tssr18400	transcription start site region 18400			976 bp upstream
Tssr18401	transcription start site region 18401			1244 bp upstream