rs27967863 SNP Detail

Summary

• ID
  rs27967863
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74511453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATTGCCGC AGCCCAATGA
  GTGAGGCTTT GGAGCAAGTG GCTGGGGGCC TGGAAAGTCT ACCTCGGAGT CAGGTGGTGC
  AGATAGACTC CAACAGGCAG GCAGACGCTA TTGAGGGCCC CTGGAGAACC AACCGATCTC
  CCTGGGAGAT GCTATGACCA TCAAATTCAA GGGCTCCAGA GGAGTCTTGG GGATATGCCA
  Y
  GAGATTGCTC AGGGCTTAGT GGGGCTCCAA CACAGTGAAA GCTCCAAGAG ACTTGAACAC
  AGAAGACGAT GAGAGGAAGG CCAAAGCACA AGGGGTTTGT CTGTGGGCGG TGAGTAGGGA
  CCTTATTCTG TGAGAGTGGG ACTCATCTTC CTTTTGTTCT TCAGACCCTC GAGCTTTGAG
  GAAAGCCAGA AAACCGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38112885	NES09253865	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27967863					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112885	NES09253865	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74511453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hoxd11	homeobox D11			Intron
				Noncoding-Transcript-Variant
Igs15	intergenic site 15			within coordinates
Rr559343	regulatory region 559343			277 bp distal
Rr559344	regulatory region 559344			724 bp proximal
Rr559345	regulatory region 559345			1847 bp proximal
Tssr18395	transcription start site region 18395			1545 bp downstream
Tssr18396	transcription start site region 18396			1428 bp downstream
Tssr18397	transcription start site region 18397			1408 bp downstream
Tssr18398	transcription start site region 18398			448 bp downstream
Tssr18399	transcription start site region 18399			882 bp upstream
Tssr18400	transcription start site region 18400			909 bp upstream
Tssr18401	transcription start site region 18401			1177 bp upstream