rs27967861 SNP Detail

Summary

• ID
  rs27967861
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:74524049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTGTAA CAATGCCCAG
  TCAGGGTGGA GAAGGGATCC CTGCTTCCTC ATTATCTCTT GAAACAGCCT GCATCCCTAT
  AAACCTGGTT GTGGATCTCC TTGTCTGCCT AGGAGGGGTG GGTAAGAAGC GGCCGACTTG
  GGGCCCTGGA GCAGTAGTGA GATACTGGTA GATGAAGCAA GCTATGGTTC TTTCTGGTGG
  S
  CTGACGGCTT AGAATGTTTT TGGGGGGACG GAGGAATCCT GTAAAGTTTG CTATTATAGT
  CACATTTTGT GCAAGCCAGA AAAGTTGTGT AGGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAAT ATGAGGAGGC AGCCTCTGGC ACAGAATATC
  CTTTCATTCA TCGTGTTAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ
ss38112883	NES09253710	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	CAST/EiJ	MOLF/EiJ
rs27967861					SNP	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38112883	NES09253710	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74524049 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11796	CpG island 11796	1751 bp distal
Cpgi11797	CpG island 11797	811 bp distal
D2Mit37	DNA segment, Chr 2, Massachusetts Institute of Technology 37	68 bp proximal
Gm14396	predicted gene 14396	1560 bp upstream
Gm28309	predicted gene 28309	within coordinates
Gm74919	predicted gene, 74919	within coordinates
Hoxd10	homeobox D10	Intron
Igs15	intergenic site 15	within coordinates
Rr44605	regulatory region 44605	1649 bp distal
Rr44606	regulatory region 44606	352 bp proximal
Rr559351	regulatory region 559351	1942 bp distal
Rr559352	regulatory region 559352	1771 bp distal
Rr559353	regulatory region 559353	1599 bp distal
Rr559354	regulatory region 559354	519 bp proximal
Rr559355	regulatory region 559355	686 bp proximal
Rr559356	regulatory region 559356	1322 bp proximal
Rr559357	regulatory region 559357	1571 bp proximal
Tssr18406	transcription start site region 18406	1836 bp downstream
Tssr18407	transcription start site region 18407	1809 bp downstream
Tssr18408	transcription start site region 18408	1765 bp downstream
Tssr18409	transcription start site region 18409	1742 bp downstream
Tssr18410	transcription start site region 18410	1729 bp downstream
Tssr18411	transcription start site region 18411	1631 bp downstream
Tssr18412	transcription start site region 18412	1556 bp upstream
Tssr18413	transcription start site region 18413	1585 bp upstream
Tssr24622	transcription start site region 24622	1926 bp upstream