rs27829707 SNP Detail

Summary

• ID
  rs27829707
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58941729 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGG GAACCACTGT TCTAGAAGGG
  Y
  TTTAGAAAAC CAGTCAGCCC TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38012426	NES09413689	PERLEGEN	MM_PANEL2	f	SNP			T	T		C	T	C		C	T	T	C		C
ss45641860	mCV22955678	ABI	CRAMUS_MOUSE	f	SNP	C	T			C
ss146397864	ENSMUSSNP5885077	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321139676	CHEV_4_58954601	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829707					SNP	C	T	T	T	C	C	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012426	NES09413689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58941729 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	1709 bp proximal
Rr592951	regulatory region 592951	1409 bp proximal
Rr592952	regulatory region 592952	1910 bp proximal
Tssr37403	transcription start site region 37403	1846 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	1899 bp upstream