rs27829706 SNP Detail

Summary

• ID
  rs27829706
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58941743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTA GAAGGGCTTT AGAAAACCAG
  Y
  CAGCCCTTTA CAAAGACACA CATAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss38012425	NES09413691	PERLEGEN	MM_PANEL2	f	SNP				T	C		C	C		C
ss45590623	mCV22955671	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss146397868	ENSMUSSNP3373802	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321139677	CHEV_4_58954615	CHEVERUD	SCREENING_POP	f	SNP						C			C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829706					SNP	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012425	NES09413691	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58941743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	1695 bp proximal
Rr592951	regulatory region 592951	1395 bp proximal
Rr592952	regulatory region 592952	1896 bp proximal
Tssr37403	transcription start site region 37403	1832 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	1885 bp upstream