rs27829705 SNP Detail

Summary

• ID
  rs27829705
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58942414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCA AACGCAGAAG CAAACTTCAT
  R
  CTCTTTGGCA GCTGCAGTAC CATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38012424	NES09413676	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	G	A	A		A	A	A	G		A
ss146397889	ENSMUSSNP5628956	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A				A
ss321139683	CHEV_4_58955286	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829705					SNP	G	A	A	A	G	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012424	NES09413676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58942414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	1024 bp proximal
Rr592951	regulatory region 592951	724 bp proximal
Rr592952	regulatory region 592952	1225 bp proximal
Tssr37403	transcription start site region 37403	1161 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	1214 bp upstream