rs27829704 SNP Detail

Summary

• ID
  rs27829704
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58942460 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGAAAAT AAATAAATAA
  AATCTTTTAA AAATAATAAA AACAAACAAA ACAAAACAAA AAAACTTGGG TTGTATGATG
  GATGGATCCT GCTTTTAAAC ATTCAAATGA ACACCCCACC CTCCATCTGA AGCAAACGCA
  GAAGCAAACT TCATGCTCTT TGGCAGCTGC AGTACCATTA AACAGCACCC TCGGCCCATT
  Y
  CTGGACTTTA TGAGCTAAGA GCCGTCACCC TAATTTCAAA AATCTAGAAA CTGCTCTCAA
  AGGAGTTACA TCAGCAGTAT ACTTGTAGGA CAATCTTCTA GAGTAGATAT AGATGCTGAT
  GTGGTCATCT TTACTAAATG TGATCTGCCT CACTTGTGTT AACTTGCTCC TGCCCATCAA
  TGGCTGCTGT ATGTCTCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38012423	NES09413677	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829704					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012423	NES09413677	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58942460 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	978 bp proximal
Rr592951	regulatory region 592951	678 bp proximal
Rr592952	regulatory region 592952	1179 bp proximal
Tssr37403	transcription start site region 37403	1115 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	1168 bp upstream