rs27829698 SNP Detail

Summary

• ID
  rs27829698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:58943181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAATCCCT TTCCTCCTTG
  GTTGCCTTTG TCAGGGTATT TTATCACAGT AAAAGAGCAA GTAACTAAGA TACTAGCGTT
  TTGAGCAGTC CTTCCTTGGG AGGGACATAA TCTGCCTAGA CATGGTATAA GTGATGGACA
  AGGGGGGAAA CGAAGAAGCT ATTGCAACAG TGCAGGCAAA GCTTTGTGTA GGGTGCTTGC
  Y
  CTTGGACCAT GGTGGCAGGT GTGGAAGCCA GAGGATGACA TTTGTATAGT GTTTTTGCTG
  TGTTACTTAT GGTTTACATT AAAGGCATCC CTAATGTTTC CTCAGTGGAT TTTTTGCAAC
  TTTGCATTCT AATGAACAGT GGTGCTGGGA GAAGCTGAGG AAGATTTAAG GTTACTGTGG
  ATGCCGGACT GCTTAGATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38012417	NES09413620	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829698					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012417	NES09413620	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58943181 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	257 bp proximal
Rr592951	regulatory region 592951	within coordinates
Rr592952	regulatory region 592952	458 bp proximal
Tssr37403	transcription start site region 37403	394 bp upstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	447 bp upstream