rs27829692 SNP Detail

Summary

• ID
  rs27829692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58943746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTAGCC TTTGCGCAGG
  CGCAGTGGGT CCCGAAGTCT TGCGCGCGCA GCTGCTGCGG GACAAGGTTC TGAACGCTTA
  TTGCGGTGCA GCTGGCTGCG GATGCTGGTG CAGGTATTGG TGCTTTCCGC CGTTCGGTTC
  GGGGCTGCGC GGGTTGTGGG CTCCGAGCGC ACGCCTTGGG CGGATTGGGA CCCAGAGCGT
  Y
  CCTCGCACCA GGCGCGCTGC GCTGCAGCTG CAGCTGCGGG GGCGTGCACT TCAGCAGCAC
  CGCGCCTTCC CGTCCTTCCA TACCACCCTG TGCTCAAGTC TTGAAAACTT CGCCACCATT
  GGTATTTTGA GCCATATAAT TCTTTGGTGT GTCTGCTCGC GTGAATGTAT GTGTATGCGT
  TTGATCCTTT TATTAGATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38012411	NES09413633	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27829692					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012411	NES09413633	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58943746 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14341	CpG island 14341			within coordinates
Rr592951	regulatory region 592951			108 bp distal
Rr592952	regulatory region 592952			within coordinates
Tssr37403	transcription start site region 37403			108 bp downstream
Zkscan16	zinc finger with KRAB and SCAN domains 16			Intron
				mRNA-UTR