rs27829685 SNP Detail

Summary

• ID
  rs27829685
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:58944333 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGT ACATCTCGGG TCCTATTTCT
  S
  AGATGTAAGT GATCTCTACA GGCCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38012404	NES09413573	PERLEGEN	MM_PANEL2	f	SNP			G	C	C	C		G	C	G		G
ss146397971	ENSMUSSNP4412409	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		C
ss321139705	CHEV_4_58957205	CHEVERUD	SCREENING_POP	f	SNP							C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27829685					SNP	G	C	G	C	C	C	C	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38012404	NES09413573	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:58944333 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14341	CpG island 14341	246 bp distal
Rr592951	regulatory region 592951	695 bp distal
Rr592952	regulatory region 592952	within coordinates
Tssr37403	transcription start site region 37403	695 bp downstream
Zkscan16	zinc finger with KRAB and SCAN domains 16	Intron