rs27707898 SNP Detail

Summary

• ID
  rs27707898
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8786019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTGGGTG AGTGGGGGTG
  TGGAGTGCCT GTGTATTTTA GATCATTTGT GACCAACTTT GGCTCATACA GTGCAAAGCT
  AAGGTGTTTG TGTATTCCAA ACTTTAGGAC TCTACTCTTA CGAACTGCTG ATTTATGCAG
  AGTTTTACTG GATAAAAAAA ATGTTATTTT GCAGCCGGCT TCTTTTTGTA AAAACCACAA
  Y
  GGTGCTTGGT TCTCTCCGTA ACTCATAGGG GAGGATTTCA GAGGAAAGCA AGGCCACTGA
  ATGGCTCTGA ACATTTTACT GCCAACTGCA GAATTTGAAA GAGAGTTGAT TGTGTCTGCT
  TAGCAGGATA GGTCTTTCAC GGCAGGTTGA AGTCCTTGTG GACAGTGTGG GAAAACACAG
  TGGAACTCAT CATTAGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859331	NES08653982	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27707898					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859331	NES08653982	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8786019 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr719	regulatory region 719			1555 bp proximal
Rr588593	regulatory region 588593			1868 bp proximal
Tssr36423	transcription start site region 36423			469 bp downstream
Tssr36424	transcription start site region 36424			331 bp downstream