rs27707893 SNP Detail

Summary

• ID
  rs27707893
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8786570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATTTCC AACAACTGTT
  CTGAAGCAGT TCCAGACATC TGAATCCGTC TTTCAGAATA TGGCTCATGT TAGAAAATAT
  TAAAATATGG TTTCCAGATG GAAGTGTAGC CGGACTCGGT TAATCTGAGC CTGTTCGCAT
  ACTCTGATAG AAAACACACT CCACTCTCTA GCCCACGTGC ACATGTAAAC ATTTATGTGC
  W
  CACACACTCA GTTGGGTCAT TGCCTCGTAC TTTCTGTGTG GAGCTATAGC CCTTTGCTGA
  TGGGCTACAC TGTGTCATGT GCAGACACAT ACACCAGTGC ACAGAGGAGG TCATAGGTGC
  CGAGAGAGAG AGAGAAGGGG GCAGCTTCTT CAGTGTCCCG CCAGCAACTC GACCGTATTC
  CGTGGGTTGA GGCTGTGAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859326	NES08653990	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27707893					SNP	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859326	NES08653990	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8786570 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr719	regulatory region 719			1004 bp proximal
Rr588593	regulatory region 588593			1317 bp proximal
Tssr36423	transcription start site region 36423			1020 bp downstream
Tssr36424	transcription start site region 36424			882 bp downstream