rs27707892 SNP Detail

Summary

• ID
  rs27707892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8786744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTGCACAT GTAAACATTT
  ATGTGCTCAC ACACTCAGTT GGGTCATTGC CTCGTACTTT CTGTGTGGAG CTATAGCCCT
  TTGCTGATGG GCTACACTGT GTCATGTGCA GACACATACA CCAGTGCACA GAGGAGGTCA
  TAGGTGCCGA GAGAGAGAGA GAAGGGGGCA GCTTCTTCAG TGTCCCGCCA GCAACTCGAC
  Y
  GTATTCCGTG GGTTGAGGCT GTGAGTTTTC TTTTTACCAT GGATTACTTG TGTGGTATCC
  AAAAAGCCAA GTATAGACGT TCACTCAAAC TTACCAGTGC CCTTATATTT ACAGACAAGG
  CTTGATTGTG CAGTCTTCAT TGAAAAGGTT TTTTTTTTCC TCCCTGTGAA TATTTTCTAA
  GCCCAGAACT CATTACAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859325	NES08653992	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27707892					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859325	NES08653992	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8786744 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr719	regulatory region 719			830 bp proximal
Rr588593	regulatory region 588593			1143 bp proximal
Rr588594	regulatory region 588594			1997 bp proximal
Tssr36423	transcription start site region 36423			1194 bp downstream
Tssr36424	transcription start site region 36424			1056 bp downstream