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rs27707888 SNP Detail
Summary
  • ID
    rs27707888
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:8787377 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTAGGTGTGT GTACTAAAGG
    GGTGTTCTGG ACTTTAGCGG TATTATCCCC AACACTTTTA GTACCAGAAT AATTTCAGTT
    CAGTTTTCTT TTGTTGTTGT TACTATTATT ATACTTAATG GTAAAAATGG ATCGAATCAT
    TCTAGGATTC CGATATAGAT TTCCAACCAT CTTCAGCTCG TGTCTGATCA GGCAGGGTCT
    R
    TGTTCCCAGC TTACTTGGGC ATATCCTTAC CAGCTGTGGA GTGGTTCGGA AACAGACTTT
    GAAATGGTGT ATGTAGTAGT GACCCTTGTA TCGTCCCTGA CACCTGCGGG AATCCAGCCT
    GGTCAGCACT GGGTGTGTAG CATTTCCTTG GTGCAGCTAG AGATCCTGTG TCCACACAGA
    GAGCTATTGG GGCTGACTCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37859321 NES08653999 PERLEGEN MM_PANEL2 f SNP A A A A A G A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27707888 SNP A A A A A G A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37859321 NES08653999 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:8787377 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Chd7 chromodomain helicase DNA binding protein 7 Intron
Noncoding-Transcript-Variant
Rr719 regulatory region 719 197 bp proximal
Rr588593 regulatory region 588593 510 bp proximal
Rr588594 regulatory region 588594 1364 bp proximal
Tssr36423 transcription start site region 36423 1827 bp downstream
Tssr36424 transcription start site region 36424 1689 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory