GTAGGTGTGT GTACTAAAGG GGTGTTCTGG ACTTTAGCGG TATTATCCCC AACACTTTTA GTACCAGAAT AATTTCAGTT CAGTTTTCTT TTGTTGTTGT TACTATTATT ATACTTAATG GTAAAAATGG ATCGAATCAT TCTAGGATTC CGATATAGAT TTCCAACCAT CTTCAGCTCG TGTCTGATCA GGCAGGGTCT R TGTTCCCAGC TTACTTGGGC ATATCCTTAC CAGCTGTGGA GTGGTTCGGA AACAGACTTT GAAATGGTGT ATGTAGTAGT GACCCTTGTA TCGTCCCTGA CACCTGCGGG AATCCAGCCT GGTCAGCACT GGGTGTGTAG CATTTCCTTG GTGCAGCTAG AGATCCTGTG TCCACACAGA GAGCTATTGG GGCTGACTCC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37859321 | NES08653999 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | A | G | A | A | A | A | A | A | G | A |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27707888 | SNP | A | A | A | A | A | G | A | A | A | A | A | A | G | A |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37859321 | NES08653999 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:8787377 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Chd7 | chromodomain helicase DNA binding protein 7 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr719 | regulatory region 719 | 197 bp proximal | ||||||
Rr588593 | regulatory region 588593 | 510 bp proximal | ||||||
Rr588594 | regulatory region 588594 | 1364 bp proximal | ||||||
Tssr36423 | transcription start site region 36423 | 1827 bp downstream | ||||||
Tssr36424 | transcription start site region 36424 | 1689 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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