rs27707883 SNP Detail

Summary

• ID
  rs27707883
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8787592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGCATAT CCTTACCAGC
  TGTGGAGTGG TTCGGAAACA GACTTTGAAA TGGTGTATGT AGTAGTGACC CTTGTATCGT
  CCCTGACACC TGCGGGAATC CAGCCTGGTC AGCACTGGGT GTGTAGCATT TCCTTGGTGC
  AGCTAGAGAT CCTGTGTCCA CACAGAGAGC TATTGGGGCT GACTCCAGGG TAGCCAGAGA
  S
  TGCACTCCTG AGAGTGAGGT CTCTGCCGAG TGTTTAGCAC AACTTTTTTT TTTTTTTTTT
  TTTTTTTGTA GGGACAGGAG GGAATTTTTA CTTAAGAAGA AAATATACTT TCTTCCTTCT
  CCCTGCTGGC ACTCACTAGT TGTCTCCCTT AGAGCTATAC ACAAATGCTG TTTTGAGTCT
  TAATGGTTTG GGAACCTTTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37859316	NES08654004	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27707883					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859316	NES08654004	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8787592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr719	regulatory region 719			within coordinates
Rr588593	regulatory region 588593			295 bp proximal
Rr588594	regulatory region 588594			1149 bp proximal
Tssr36424	transcription start site region 36424			1904 bp downstream