TTGGGCATAT CCTTACCAGC TGTGGAGTGG TTCGGAAACA GACTTTGAAA TGGTGTATGT AGTAGTGACC CTTGTATCGT CCCTGACACC TGCGGGAATC CAGCCTGGTC AGCACTGGGT GTGTAGCATT TCCTTGGTGC AGCTAGAGAT CCTGTGTCCA CACAGAGAGC TATTGGGGCT GACTCCAGGG TAGCCAGAGA S TGCACTCCTG AGAGTGAGGT CTCTGCCGAG TGTTTAGCAC AACTTTTTTT TTTTTTTTTT TTTTTTTGTA GGGACAGGAG GGAATTTTTA CTTAAGAAGA AAATATACTT TCTTCCTTCT CCCTGCTGGC ACTCACTAGT TGTCTCCCTT AGAGCTATAC ACAAATGCTG TTTTGAGTCT TAATGGTTTG GGAACCTTTG S = C/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | CAST/EiJ |
DBA/2J |
MOLF/EiJ |
PWD/PhJ |
---|---|---|---|---|---|---|---|---|---|
ss37859316 | NES08654004 | PERLEGEN | MM_PANEL2 | f | SNP | C | C | C | G |
SNP Consensus Information | |||||||||
SNP | Consensus Type | CAST/EiJ |
DBA/2J |
MOLF/EiJ |
PWD/PhJ |
||||
rs27707883 | SNP | C | C | C | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37859316 | NES08654004 | PERLEGEN | MM_PANEL | f | SNP | C/G |
Location: Chr4:8787592 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Chd7 | chromodomain helicase DNA binding protein 7 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Rr719 | regulatory region 719 | within coordinates | ||||||
Rr588593 | regulatory region 588593 | 295 bp proximal | ||||||
Rr588594 | regulatory region 588594 | 1149 bp proximal | ||||||
Tssr36424 | transcription start site region 36424 | 1904 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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