rs27686443 SNP Detail

Summary

• ID
  rs27686443
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4147366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAGTACTT CAGTACTGAT
  CCCCTTACCC ATCTCTGTGT TCTTCCTTCC CTGACAGAGC AAAAGATCAT CCTCCCTCCC
  TCCCTCCCTC CCTCCCTCCC TCCCTCCTTC CCTCCCTCCC ATCTCCTTTC TTTCTCCTCC
  CTCTCTCCCT TTCTTTCTTG AGTTCCAGCT TTCTTTTTTT GCATGTGTAT TGTTCATCAG
  Y
  TCGTGGTTGG AGACTCAAGC TGACTGAACA GTCTTTTTCC TGCTTGCTAC AACAAGGTAT
  CATGGAGCAA AAGTATCCCA AGCTGGAACT GACTCTGAAC AAATTTGTTT AGTATGTTTC
  CAAGTCTGAG CTGGGCCTGG GCCTCAGGCT CCACCCACCA ATCCCATAGT GGATAGGACA
  GCAAACTAAG GTGGAGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	PWD/PhJ
ss37873866	NES08683311	PERLEGEN	MM_PANEL2	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	PWD/PhJ
rs27686443					SNP	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37873866	NES08683311	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4147366 () rs orientation: forward

Symbol	Name	Function Class
A830012C17Rik	RIKEN cDNA A830012C17 gene	664 bp upstream
Gm70307	predicted gene, 70307	within coordinates
Rr588276	regulatory region 588276	1162 bp proximal