rs27686441 SNP Detail

Summary

• ID
  rs27686441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:4149574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACTGGCTGG TTTTTCCCAG CCTCACTCCC TCAGTTACCT
  CCATGTTGAA AGGACTGTTG GGTTCGGAGT TAGAGAGAAG CAGGAAGTGC TGCTGGCCTC
  Y
  AAGCCCTACC TCAGCTGCTC ACAATCTCCT TCTGTCCACC TGTGTCTTCT TTATTGCATT
  TTGTTAATGT TTATATTCTC CATGTTCAAG TCTTTCATTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37873864	NES08683251	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27686441					SNP	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37873864	NES08683251	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:4149574 () rs orientation: forward

Symbol	Name	Function Class
A830012C17Rik	RIKEN cDNA A830012C17 gene	within coordinates
Gm70307	predicted gene, 70307	within coordinates
Rr588276	regulatory region 588276	443 bp distal