rs27676102 SNP Detail

Summary

• ID
  rs27676102
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8705564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGTTGC AGGCTGTTCT
  TGCTGACCCT TTGGTCTGAC TTTACTGTTG TTGCAGGTAT GCTATGTAAA ATTATGATTG
  CACTAGGTTT TAGGAGACAC TGGAAATGCT TCCCCTTGCT TGGAAGTACA GGCTAATGTG
  ACCATATGGG TGATGGAGAC ACTGTGTGTG AGAAAGTGCT AGGACTTTGT GTTGTCGAGG
  Y
  GTGGTCAGCG TGCTAGCAGT GAAGTAATGT GAACAGAGTG GGCTACCATC AGCCAAAGGC
  CCTGGTAGGA ACCTGGTAGC CCACCCAGAC AGCCTGCGGG GGCCACGGCA GGGCTTAGTG
  TCTCGGCACC GTCTCATCAG GGTGGCTTTC TTGGAGCTGT GGCCCTTTGG AGAGGGACAC
  AGCACTGTCC CCCACTTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859721	NES08656517	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676102					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859721	NES08656517	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8705564 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588565	regulatory region 588565			362 bp distal
Rr588566	regulatory region 588566			within coordinates
Rr588567	regulatory region 588567			1256 bp proximal