rs27676094 SNP Detail

Summary

• ID
  rs27676094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8707097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTTTGA ACAAATGACT
  AACTAGTTCT GCTTATCAGT AGCAAGTTGC ACAGCACTTA GGACTCCGTT TCTTCACCTG
  CACCTGGCGG TGGTGACAGC GCTTCAGCCA AATGGGGATT AATGCAGCAG TGCGTCCGAA
  TACCCTACTC TGCTTTGTGC GCTGTTAGCG CTTAATAAAT TAATTGACTT GCAGTAGTTT
  Y
  TATTTCACTA TTTCCTTACC TTTTGTGTTC ATGATGTTAT ACTGAGAGGA TTGTAAAATC
  AGAGAAGACA AATAACACGC TGTATGCAAG GTCATAGTTT TTCACCACTT TTGTGGTATA
  AACAGGGAAT CTTTTGAGTT TTAAGAGTAA ATTTAACTAA TTATAGCTCC CTCACCCCCA
  ATGCAACTTT GCCTTAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37859713	NES08656418	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27676094					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859713	NES08656418	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8707097 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588565	regulatory region 588565			1895 bp distal
Rr588566	regulatory region 588566			736 bp distal
Rr588567	regulatory region 588567			31 bp distal
Rr588568	regulatory region 588568			581 bp proximal
Rr588569	regulatory region 588569			1342 bp proximal