rs27676090 SNP Detail

Summary

• ID
  rs27676090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8708433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAAAGCCC AAGCCACAGA
  ATCCGGGCAT AAACAGGTGT TTTGTTCCTA TTTTTTCACT AAATTTAAAA AGGCGTCTGC
  TATGTTAAAA TATTAAAAAA AATTTCTTTA AAAGTAATGA CTTCTTAGTT TGCAATCACA
  TTATTTTACA TTTTTTTTCC CCACAGAGTA AAAGGAAACA TACTTGAATG TATCTGAAAC
  R
  GAAACTAAAG CCAAAAGGTT TGTCATTTTA ATCACAGCTG GTATGGCGCC TTACCATACA
  GCCCCACCAG ACAGCGCACA GCACAGCACA GCTTAGATGG TCTTGCTTCC ACATGCTTCT
  GCCGGGCTAC TAGATCCAAC TCAGGCAGAC AGCTCTTTAT AGTGTCACTC TGCCAGATGC
  TGTCAATACA TTGAGTACCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859709	NES08656375	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676090					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859709	NES08656375	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8708433 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			734 bp upstream
Rr588567	regulatory region 588567			1367 bp distal
Rr588568	regulatory region 588568			137 bp distal
Rr588569	regulatory region 588569			6 bp proximal
Rr588570	regulatory region 588570			844 bp proximal