rs27676089 SNP Detail

Summary

• ID
  rs27676089
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8708500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGGCGTC TGCTATGTTA
  AAATATTAAA AAAAATTTCT TTAAAAGTAA TGACTTCTTA GTTTGCAATC ACATTATTTT
  ACATTTTTTT TCCCCACAGA GTAAAAGGAA ACATACTTGA ATGTATCTGA AACGGAAACT
  AAAGCCAAAA GGTTTGTCAT TTTAATCACA GCTGGTATGG CGCCTTACCA TACAGCCCCA
  S
  CAGACAGCGC ACAGCACAGC ACAGCTTAGA TGGTCTTGCT TCCACATGCT TCTGCCGGGC
  TACTAGATCC AACTCAGGCA GACAGCTCTT TATAGTGTCA CTCTGCCAGA TGCTGTCAAT
  ACATTGAGTA CCATAAAACA GTGTCACCAG GATTGTCAAG AGTGATGACA AACTCTATTA
  AAACTAACAC AGTAAAGCAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859708	NES08656376	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676089					SNP	C	C	C	C	C	G	C	C	C	C	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859708	NES08656376	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8708500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			667 bp upstream
Rr588567	regulatory region 588567			1434 bp distal
Rr588568	regulatory region 588568			204 bp distal
Rr588569	regulatory region 588569			within coordinates
Rr588570	regulatory region 588570			777 bp proximal
Rr588571	regulatory region 588571			1951 bp proximal