rs27676080 SNP Detail

Summary

• ID
  rs27676080
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8710633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCTGCTG TTTCAGGGAG
  GAGACGACAC AGAAATGAGA CACAGAAATG AAAAGAAACA AATGCTTAAG GACCTAGTTC
  ATCACCTGTG CCAAGCTCTG CTCAGTCCTC TTGAGGTACT CTCTTGGTAT GAAATGGGAT
  AGTGAAGTGG GCTTTGTAAA AAAAATTCTG TTTGTGTGCC CAGGGCTCAG TAGAACCTTA
  S
  GGGAAGCTTC TTGCCTTTGC ACTGCCTGGG TCGGCTGGAC TCCGCACTGG TCATTTTCCT
  GTGCCAAGGT TGTGGTTGGC TGGCTGACAT GTGCTACTAC CCAGCAGGCC TTGGAGTTGA
  GTGGTGGATG CTTTGTGAGG CAGCACACAG AATGTTAGAG ATTGTGGGCT CTGTGTGAGG
  ACCTGGTTCT TAGCATCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859699	NES08656294	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676080					SNP	G	G	G	G	C	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859699	NES08656294	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8710633 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			1165 bp downstream
Rr588569	regulatory region 588569			1810 bp distal
Rr588570	regulatory region 588570			381 bp distal
Rr588571	regulatory region 588571			within coordinates
Rr588572	regulatory region 588572			1572 bp proximal
Tssr36417	transcription start site region 36417			1131 bp upstream