rs27676079 SNP Detail

Summary

• ID
  rs27676079
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8710666 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAGACAC AGAAATGAAA
  AGAAACAAAT GCTTAAGGAC CTAGTTCATC ACCTGTGCCA AGCTCTGCTC AGTCCTCTTG
  AGGTACTCTC TTGGTATGAA ATGGGATAGT GAAGTGGGCT TTGTAAAAAA AATTCTGTTT
  GTGTGCCCAG GGCTCAGTAG AACCTTAGGG GAAGCTTCTT GCCTTTGCAC TGCCTGGGTC
  K
  GCTGGACTCC GCACTGGTCA TTTTCCTGTG CCAAGGTTGT GGTTGGCTGG CTGACATGTG
  CTACTACCCA GCAGGCCTTG GAGTTGAGTG GTGGATGCTT TGTGAGGCAG CACACAGAAT
  GTTAGAGATT GTGGGCTCTG TGTGAGGACC TGGTTCTTAG CATCCTTACC CATGTGATCT
  TGGGAAAGTT GCTTCATCTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37859698	NES08656295	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27676079					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859698	NES08656295	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8710666 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			1198 bp downstream
Rr588569	regulatory region 588569			1843 bp distal
Rr588570	regulatory region 588570			414 bp distal
Rr588571	regulatory region 588571			within coordinates
Rr588572	regulatory region 588572			1539 bp proximal
Tssr36417	transcription start site region 36417			1098 bp upstream