rs27676075 SNP Detail

Summary

• ID
  rs27676075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8711378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGCGG CTGGGGGTGA
  GGGGGAATGG GGATGAATGG ATATGAATAT ATGAATGAAT GAATATGTGA GTGAATGAAT
  ATATGAATGA ATGAGTATAT GAATGAGGGA ATATAAATAT GAATGAATGA GATTGGGTAT
  GTCTTTATAG GTCGCAGCCC TGGGCTACTC AGTAGCTCTG AGAGAGTGTG TGTGAAATGC
  Y
  CATGGGCCAG TTTGTTAGGG ACGCAGGAAA TGGGGACTAT GGTGGACTAG ATTCTGACTC
  TGAGTCCCAG CCTCTTGCAG TGATGGTTTT GTGTACCTGT ACAAAGAAGC CCTGCAATCT
  TTGTATCTTT CATTTTACTT CCCAATGTAA GCGTTACTGT TAAGTGTATC ACTGGTGAGT
  GGATTGATTT TGTTTGTTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859694	NES08656254	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676075					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859694	NES08656254	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8711378 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			1910 bp downstream
Rr588570	regulatory region 588570			1126 bp distal
Rr588571	regulatory region 588571			550 bp distal
Rr588572	regulatory region 588572			827 bp proximal
Rr588573	regulatory region 588573			1814 bp proximal
Tssr36417	transcription start site region 36417			386 bp upstream