rs27676074 SNP Detail

Summary

• ID
  rs27676074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8711459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAATGAA TGAGTATATG
  AATGAGGGAA TATAAATATG AATGAATGAG ATTGGGTATG TCTTTATAGG TCGCAGCCCT
  GGGCTACTCA GTAGCTCTGA GAGAGTGTGT GTGAAATGCC CATGGGCCAG TTTGTTAGGG
  ACGCAGGAAA TGGGGACTAT GGTGGACTAG ATTCTGACTC TGAGTCCCAG CCTCTTGCAG
  Y
  GATGGTTTTG TGTACCTGTA CAAAGAAGCC CTGCAATCTT TGTATCTTTC ATTTTACTTC
  CCAATGTAAG CGTTACTGTT AAGTGTATCA CTGGTGAGTG GATTGATTTT GTTTGTTTGT
  TTGTCTGTTT GTTTGTTTCT TGAGACAGGG TTTCTCTGCG TAGCCCTGGC TGTCCTGGAA
  CTCACTTTGT AGACCAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859693	NES08656258	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676074					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859693	NES08656258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8711459 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr398159	regulatory region 398159			1991 bp downstream
Rr588570	regulatory region 588570			1207 bp distal
Rr588571	regulatory region 588571			631 bp distal
Rr588572	regulatory region 588572			746 bp proximal
Rr588573	regulatory region 588573			1733 bp proximal
Tssr36417	transcription start site region 36417			305 bp upstream