rs27676070 SNP Detail

Summary

• ID
  rs27676070
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8712009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTAGAGA GTATAGCTTC
  TCTGTATAGT TGGATGTGAA TGTGGAAAAT ATTTCAACCT TTCCCCCTTG CTTTAGCACT
  AATTTTTTCA TACATGTTGA GGGCGCAAAA GTGGGAACAT GCAGAAGTTT AAAAAACCCC
  TCCAGTTTCC CTTTCCTATT TAGTTCAAGC ATTCTTTCTA ACTTTGACCT GAGTGGTTAC
  R
  ACAACTGAAT TCAGGTTGCG TATGTACTCC CCATCCATTA GAGCTTCTGC GAAGACGCGA
  CTCCATTGAG CTGAGACCCT CTAGCTTGAG TTCTGGGAAT ATAGACTGAT TTTGGTTGTA
  CACTAAAGCC CACTGTTTTA GACCAGTCTC TCCCTGCCAG AGCTTCTCAG GAGCTGGGGA
  ATGGGGCACA GAAGTGACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859689	NES08656238	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676070					SNP	G	G	G	G	G	A	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859689	NES08656238	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8712009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588570	regulatory region 588570			1757 bp distal
Rr588571	regulatory region 588571			1181 bp distal
Rr588572	regulatory region 588572			196 bp proximal
Rr588573	regulatory region 588573			1183 bp proximal
Tssr36417	transcription start site region 36417			242 bp downstream