rs27676068 SNP Detail

Summary

• ID
  rs27676068
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8712243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTAGAG CTTCTGCGAA
  GACGCGACTC CATTGAGCTG AGACCCTCTA GCTTGAGTTC TGGGAATATA GACTGATTTT
  GGTTGTACAC TAAAGCCCAC TGTTTTAGAC CAGTCTCTCC CTGCCAGAGC TTCTCAGGAG
  CTGGGGAATG GGGCACAGAA GTGACAGAGG AGAAGTGACA GAGCACATTG ACAGAGGAGC
  Y
  TCAGTCCTAG TGAGGTTTGC CAGTTATCTG TTGCTGTGTT ACAAGTGGCG TTGAAGCTCA
  GCACTTTAAA CAGCAACCAT CCTGTTCACT TGCAGTTCTG TGAGTTGTCA ATCTGTACTG
  ATCTCAGCTA GACTCCACCC ACATCTGTGG TCAGCTGGCC GTTGGTGACC TTACTAAGTT
  GGTTAGCTGG GTCTGTGCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859687	NES08656242	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27676068					SNP	T	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859687	NES08656242	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8712243 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588570	regulatory region 588570			1991 bp distal
Rr588571	regulatory region 588571			1415 bp distal
Rr588572	regulatory region 588572			within coordinates
Rr588573	regulatory region 588573			949 bp proximal
Tssr36417	transcription start site region 36417			476 bp downstream