rs27663401 SNP Detail

Summary

• ID
  rs27663401
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:6390373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTGCCA ATCCAGTTGC
  ATGGACTTTG CGTCATCAAC TGTCTTCTGA GATTTCCTTC CCAGCATCTT CTGCATTGGG
  AGAGGCTGTC ACTGTATAGA CAGGCCTTTC ACATCGTTGA CTAGATATAT TCTTAAATAA
  TTCAAAAGGT TATTTTGAAT GAATTTTTTT GGTAATTTTT TTTCCAAAAG ATTTGGGCCA
  R
  TAGGAAGGTA CAGCTACAGA ATTTCATATT GTAAACAGAA CAGATGGCCT TAAAATCTTA
  CAGTAACACC ATGGCAGGGT TCTAGAAAGT CAGCGAGTGT TAAGTGGCGT GACAGCTGCT
  GAGGCAGACA CTAGAGGCCT GTTCTCTTCA AATTAGAGCA AAGTTTTGCC TGTAATCCCA
  GCAACCTGGC TTGGGTCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37867622	NES08667756	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	G	G		A	G	G	G	G	G	A	A
ss45594803	mCV22885143	ABI	CRAMUS_MOUSE	f	SNP		G	A				G		G
ss145961204	ENSMUSSNP1521510	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27663401					SNP	G	G	A	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37867622	NES08667756	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:6390373 () rs orientation: forward

Symbol	Name	Function Class
Rr588384	regulatory region 588384	within coordinates
Sdcbp	syndecan binding protein	Intron