rs27661662 SNP Detail

Summary

• ID
  rs27661662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8713482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTGTCT GAAGCAGCTG
  CCTCAGATCC TCTCCACCCC CACGACTTTG CTTCTCCACC TTCCTGGGCT GTCAGGCCTG
  GGCTACCCTT CTGCTTATCT GGGCAGCAGC TCTCGACCCC CAGCCCTCTG CTGTCTGTAT
  CACCTTGTCA CATCACAGCT GTCTCTCACG ACTCACCCTG TGTCCCTGTT CCCTTCAGCA
  Y
  GGCCCACTCC AGAGCACCAG CTCCCGGGCT GTAACTGGGG TTGTGTGGTA GGACTTTCTC
  TCCATCCTCT TGTCCGTAAC TTTTTGCAGC AGACTTTTCC CTCCTTAAAC CCATTCATAG
  AAAATTCTCC CTCTGAAACA TTTCCTGGCA CGGCTCTGCT TGATCATGTA TTGTTTTGTC
  TCAACCTTTC CCAAAGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859681	NES08656222	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27661662					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859681	NES08656222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8713482 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588572	regulatory region 588572			761 bp distal
Rr588573	regulatory region 588573			within coordinates
Tssr36417	transcription start site region 36417			1715 bp downstream