CCTCTCCCCC ACCCCCTTGC TCTCTGTTTG AAGACTACAC TGTAACTTGG TTTCCAGCAG TTGCTTGTGC ATTAGCATCC ACTATAGCTC CTTTTCTTTA CCTTCTGTGG GTAGCTGTGA AATATGTGTT TCTGTGGTCC TTAATTGACC TACTGTCGAG AGAGTGGGAA TGTAAGTTGT GAGCTGTAGG AAATGACAGC R AATGGTAATT TATAGGAGTT GCTTTGAGAT TTGTGTGCCG GCACTGAAGG ATCACAGGGT TTTATAAGTT AAGACTTTTG TAGCTTTGCC AATTTGTATT TACAAAGGCA CCCCTCCCCC TTTTTGTGGA TTTTGGTCTC CACGGCCTTG ACTTGTGAAG AGTAGTGTGT GTATGAACAG ATTTTTCTGA ATGCATCTTC R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss37859461 | NES08655124 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | A | G | G | G | G | G | G | A | G |
SNP Consensus Information | |||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs27661442 | SNP | G | G | G | G | G | A | G | G | G | G | G | G | A | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss37859461 | NES08655124 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr4:8753587 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Chd7 | chromodomain helicase DNA binding protein 7 | Intron | ||||||
Noncoding-Transcript-Variant | ||||||||
Cpgi14009 | CpG island 14009 | 1299 bp distal | ||||||
Rr588583 | regulatory region 588583 | 1788 bp proximal | ||||||
Tssr36422 | transcription start site region 36422 | 1236 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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