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rs27661442 SNP Detail
Summary
  • ID
    rs27661442
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr4:8753587 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCTCTCCCCC ACCCCCTTGC
    TCTCTGTTTG AAGACTACAC TGTAACTTGG TTTCCAGCAG TTGCTTGTGC ATTAGCATCC
    ACTATAGCTC CTTTTCTTTA CCTTCTGTGG GTAGCTGTGA AATATGTGTT TCTGTGGTCC
    TTAATTGACC TACTGTCGAG AGAGTGGGAA TGTAAGTTGT GAGCTGTAGG AAATGACAGC
    R
    AATGGTAATT TATAGGAGTT GCTTTGAGAT TTGTGTGCCG GCACTGAAGG ATCACAGGGT
    TTTATAAGTT AAGACTTTTG TAGCTTTGCC AATTTGTATT TACAAAGGCA CCCCTCCCCC
    TTTTTGTGGA TTTTGGTCTC CACGGCCTTG ACTTGTGAAG AGTAGTGTGT GTATGAACAG
    ATTTTTCTGA ATGCATCTTC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37859461 NES08655124 PERLEGEN MM_PANEL2 f SNP G G G G G A G G G G G G A G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27661442 SNP G G G G G A G G G G G G A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37859461 NES08655124 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr4:8753587 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Chd7 chromodomain helicase DNA binding protein 7 Intron
Noncoding-Transcript-Variant
Cpgi14009 CpG island 14009 1299 bp distal
Rr588583 regulatory region 588583 1788 bp proximal
Tssr36422 transcription start site region 36422 1236 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory