rs27661440 SNP Detail

Summary

• ID
  rs27661440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8753750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGAATGT AAGTTGTGAG
  CTGTAGGAAA TGACAGCGAA TGGTAATTTA TAGGAGTTGC TTTGAGATTT GTGTGCCGGC
  ACTGAAGGAT CACAGGGTTT TATAAGTTAA GACTTTTGTA GCTTTGCCAA TTTGTATTTA
  CAAAGGCACC CCTCCCCCTT TTTGTGGATT TTGGTCTCCA CGGCCTTGAC TTGTGAAGAG
  Y
  AGTGTGTGTA TGAACAGATT TTTCTGAATG CATCTTCACC TCCCCCTGGG CCTACAGGTC
  TTCATGGGGC ACAGTGGTTG ATTTCAGAAT TGTATGGCAT ACTGGTTCTT CCTGATGGAC
  TTAATCAATT TGGGAAACTA TGACCTGTGT GTGACTGCAA ACCAGAGTGA AAGATCATGA
  GTGCTTATGT GGCAGATGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37859459	NES08655126	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27661440					SNP	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859459	NES08655126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8753750 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Cpgi14009	CpG island 14009			1462 bp distal
Rr588583	regulatory region 588583			1625 bp proximal
Tssr36422	transcription start site region 36422			1399 bp downstream