rs27661431 SNP Detail

Summary

• ID
  rs27661431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8755205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTGGGGC TCCCTGAGGA
  CATTCTGGTG GCCCCCAGAA GAGAAGTGCT CTCTTACTTA CTACTTACAG TTTTCAGAGG
  ACAGTAGCAG CCCTGGCTTC TGAGCCCCAT GGGGGCCAGT GTTGTGTGCT ATATAGTCTG
  GGAGACCCCG AGGGGTCTGT GGTCTAAGTG GGCACCTCAA AAGACAAAGT CAGAACTTTT
  Y
  TAAGGCCGCA GGCCCGGGCA TTTGAGCTGG TGTTTCTTCA TAGGCTCAGC TCTGTTTGTA
  TTTTTCTTGG CATTTACTTC CCTATTTGTG TTTAACTTGG TAACCTCTTT AGTTTTGGGG
  GCAATCAGTT GATTTGAAAA ATAAAATCAG AAGGGTGTTT GAATCTCTGT TTGCCCCTAA
  GCAGGTTGGT GACACAGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37859450	NES08654884	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27661431					SNP	C	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859450	NES08654884	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8755205 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588583	regulatory region 588583			170 bp proximal