rs27661428 SNP Detail

Summary

• ID
  rs27661428
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8755575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGCCCCTA AGCAGGTTGG
  TGACACAGGA TAAGTGATTT AACCTCCCTG AACCTGATCC TTCAGTGAGA CCAGAATGAG
  AGCAGCCCCA GAGGCTCGGG TGGGGTAACG CCCCTCGACA ATGAACTTTC ATCTCTAGGG
  TGTAGCTTAT GACCTTTACC CTCGTGTTGC CAGGTGTGAA GAGGTTGGTT GTGAATAATT
  Y
  AGAATGCTCT CATGTGATCT CGCCTCTTTC TGAATGACTC AGCCTGGGCA ACTACATCAT
  TCTAACTGTG CTTTGCTCGA GAACTACCAA GTCCATACTG AATTTCTTGT AAGATACCAT
  GGGAGTTCAA GATTGAAGTA TGCAGGAATG CCCACCGAAT TTCCACAGAC ATACAAGCTT
  GTTGAGTTTC TCATCCAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37859447	NES08654862	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27661428					SNP	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859447	NES08654862	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8755575 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588583	regulatory region 588583			within coordinates