rs27661421 SNP Detail

Summary

• ID
  rs27661421
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8756311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCTAAAG AAAGGGGCTT
  CTCTACTTTC TGGGTGGAAG TGCAGTGATA TCAGCAGTAC CATCTTGTGA AAGCCCAGTG
  GGGACCCCAA AACAAACCAC TGTCCTGTAG CAAGTGTCCA CAGTTACCTG TCGCCAAGTT
  AGCTTCACTA ATTTTAGCGT CAGACATTGT TTTGACTTTA TTTCCTGATT TCATGGAACA
  Y
  TACTCAAACA ATGGAGGTGC TCTCTGTGCT TTTGGTTGAA AGACAGAAAA CAGCTTTGCT
  TTTAGGGAAA GAGAGAGCCC AATGGGGAAG TAATGCTCCT TATGGAGGTA TGGAGGATCA
  GTCTGAGTCG AGGGAGAGTG GATAGAGGCT GAGGACAACA GCTAAGGCTT AGCAAGTTGT
  GATACGAAGT TGATAGAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37859440	NES08654842	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27661421					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859440	NES08654842	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8756311 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588583	regulatory region 588583			557 bp distal
Rr588584	regulatory region 588584			1828 bp proximal