rs27661420 SNP Detail

Summary

• ID
  rs27661420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:8756343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGAAGTG CAGTGATATC
  AGCAGTACCA TCTTGTGAAA GCCCAGTGGG GACCCCAAAA CAAACCACTG TCCTGTAGCA
  AGTGTCCACA GTTACCTGTC GCCAAGTTAG CTTCACTAAT TTTAGCGTCA GACATTGTTT
  TGACTTTATT TCCTGATTTC ATGGAACATT ACTCAAACAA TGGAGGTGCT CTCTGTGCTT
  Y
  TGGTTGAAAG ACAGAAAACA GCTTTGCTTT TAGGGAAAGA GAGAGCCCAA TGGGGAAGTA
  ATGCTCCTTA TGGAGGTATG GAGGATCAGT CTGAGTCGAG GGAGAGTGGA TAGAGGCTGA
  GGACAACAGC TAAGGCTTAG CAAGTTGTGA TACGAAGTTG ATAGAATGGC TCAGGCCTTG
  CCTATCTCAT GACCTGAAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37859439	NES08654843	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27661420					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37859439	NES08654843	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:8756343 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Chd7	chromodomain helicase DNA binding protein 7			Intron
				Noncoding-Transcript-Variant
Rr588583	regulatory region 588583			589 bp distal
Rr588584	regulatory region 588584			1796 bp proximal