rs27649605 SNP Detail

Summary

• ID
  rs27649605
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177934535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACATAT AATTTCTAAA
  TTCCCACTTA TTTGGGCATC ATTATCAGAC TTAACATCCA GGCGCAGCAC TTCCACAAAG
  TGGTACCCAT GCCAGCCTGG ACCATAGTTT CTTCTAGATC TGAGGTGCAG GTCGGGAAGG
  AGGTGACTTT TCTCATGTCT ACTGTCAGTT TAGAACATTT GCAGCAGCCA AGTGCACAGG
  Y
  ATATTGTGTG TGAAGCAGAG CTCATGGTTC TCTGAGGCAG AAGGTGGCCA ACTCTGCTCC
  TCAGATGGCT GCTGCCCAGA GCAGTTGTCC ATTGGCATCA GTCTCCTTTA ACTTGTTAGC
  TGGAGAGGAA CAGAGTCCTG GCCTCCTTTC AGCTTTAATT CCAGTGGCTG GAGCAAGCCC
  TCTTGCCGGT TAGGGGTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37848626	NES08705034	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27649605					SNP	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37848626	NES08705034	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177934535 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572388	regulatory region 572388	1438 bp proximal